Example code

Here are some examples of using the API. For examples of using scripts please see the command-line section.

Contents:

• Using the Ensembl variant mapper API
  • Basic Ensembl mapper usage
  • Inferring ALT alleles
  • Ensemblisation
  • Mapping pandas.DataFrame
  • Summary
• Mapping using Tabix and VCF files
• Summary
• INDEL normalisation
  • Searching for DNA sequence
  • Normalising alleles
  • Summary